The Analysis of Medical Signals (i.e. EMG, ECG, EEG, and FID) using Wavelet Transforms.

For long time, the analysis of medical signals has been used for the diagnosis of medical problems. Now days, these signals can be generated using much better equipment and contain more information  lost otherwise. For example: the 7 or 11 Tesla MRI scanners/MRS(Magnetic resonance spectroscopic machines) can provide more data than the 1.5 Tesla scanners/MRS ones. Furthermore, these data now days,  can be analyzed using much more powerful  mathematical tools (WAVELET TRANSFORMS versus FOURIER TRANSFORMS) and can provide greater diagnostic power. This is exactly what FKW does with medical signals. That is,  we analyze these signals using our in house developed Medical Signal Wavelet Analysis (MSWA) software. This software can provide a high resolution biochemical analysis of brain tumors, and even distinguish a benign tumor from a malignant one, and can facilitate not only the diagnosis of a disease but also help follow and evaluate the performance of a therapy protocol. It can provide the neuro-chemical profile of portions of the brain or other parts of the body  and enable the medical researcher to perform medical studies associated with various diseases such as Parkinson’s, Dementia, and Alzheimer’s .
In FKW, the software has been used to study muscle fatigue problems with a number of articles  already prepared.
MSWA software, with proper modifications and appropriate calibration has the potential to replace biopsy (or needle aspiration) for the cases that biopsy cannot be done.
However, the situation for this research activity  is very similar as it is in the epidemiological study. That is, although this software is very powerful, useful and thoroughly checked, the availability of real data is a problem. Which is may be due to the fact that FKW is not a known organization, andfor that reason hospitals, and medical practitioners are hesitant to share their data. But, again, if a well-known and trustable organization, such as a university is involved, things could be  very different.
NOTE: Since the MSWA software is written in Python, you cannot run it in a web page environment. However, its capabilities and significance can be demonstrated to anyone at any time. 

 

A Method for Tumor Characterization from Nuclear Magnetic Resonance Spectroscopic Data Using Wavelets

By Nick D. Panagiotacopulos, Ph.D

Purpose

The aim of this research is to study the potential of a wavelet-based method for the analysis of nuclear magnetic Resonance Spectroscopic (MRS) signals obtained from patients with tumors.

 The Problem of Tumor Characterization Using Current Methodology

There are two basic questions which must be answered once a tumor is found:

  1. Is the tumor benign or malignant?
  2. Can it be categorized?

Clearly, an accurate and timely answer to these questions is crucial. If the tumor is on the surface of the human body, its diagnosis is easier.

However, for interior tumors the situation is more difficult. The first step is to detect the tumor via X-ray, CAT or MRI examination. If the tumors are large, and have distinct geometrical boundaries, then the trained radiologist can draw some conclusions. However, if the tumors are small and not clearly visible, and are subject to psychophysical perception interpretations, a sure diagnosis is difficult. Furthermore, no biochemical analysis is possible from such examinations.

Unfortunately, in almost all cases, the patient goes through the procedure of biopsy. Biopsy is an invasive surgical technique, which will provide the most reliable biochemical composition of the tumor. There are two kinds of biopsies. The first one is a biopsy involving surgery and the second is known as needle aspiration. Both kinds will create trauma and bleeding. Note that bleeding, in the case of a malignant tumor can be risky in the sense that it may propagate cancerous cells in other parts of the body, and could also favor the creation of blood clots. In the case of the surgical biopsy the samples are usually large and provide adequate data for an accurate biochemical analysis, but this is not true in the case of needle aspiration. In the needle aspiration case the samples are usually small and in many cases inadequate for an accurate and reliable diagnosis. Furthermore, due to the tumor’s location, the degrees of freedom of getting the desired sample are limited. Therefore, the need for a better method is clear.

Proposition

In this study, the analysis of FID signals is done using a powerful mathematical tool known as WAVELETS. Wavelets will provide high resolution spectra containing not only the chemical markers obtained from the currently used Fourier analysis, but also a host of other potential chemical markers that need to be identified. These new markers could be useful for diagnosis purposes and  for the evaluation of medical treatments as well. However, such study can be clinically useful only if proper tumor calibration is done first.

Note: From 1995 until now, Dr. Nick Panagiotacopulos (Dr. P.) has developed a software system which is doing exactly what we discussed earlier. Initially, the purpose of the system was to analyze FID signals related to cancer, but the system can be used also for the analysis of other medical signals such as electromyograms, electrocardiograms, encephalograms, and  cases involving Parkinson, Alzheimer’s and dementia. For example, measure dopamine levels in the brain.

Dr. P. is donating this system to FKW, and he is inviting medical research groups from anywhere in the world, to collaborate with him in the tumor calibration aspects of the study and subsequently in the FID signal analysis.

Significance

The wavelet approach it can be (for certain cases) an alternative to biopsy, and is suitable for the biochemical analysis of tumors. Furthermore, the method is non-invasive (non-surgical) and therefore convenient, safe, fast, cheap and it will provide reliable (accurate, and reproducible) results.

References

ON THE APPLICATION OF WAVELETS TO MEDICAL SIGNAL ANALYSIS (EMG, and FID)

“Time-Frequency evaluation of surface EMG signals”.

Pope MH, Aleksiev A, Panagiotacopulos ND, Wilder DG, Friesen K, Stielau W.

Proceedings of the ISSLS (Second International Society for the Study of the Lumbar Spine), Burlington, Vermont, June 25-29, 1996.

http://www.researchgate.net/publication/12385109_Evaluation_of_low_back_muscle_surface_EMG_signals_using_wavelets

“Detection of wire EMG activity in whiplash injuries using Wavelets”.

N. D. Panagiotacopulos, J.C. Lee, M.H. Pope, M.L.Magnusson, K. Friesen, and W. Stielau

IOWA Orthopedic Journal, 1997, Vol.17, pp. 134-148.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2378100/

“Fatigue identification from low back Surface EMG signals using Wavelets”,

N. D. Panagioacopulos, J. C. Lee, M. H. Pope, D. G. Wilder, K. Friesen, W. Stielau

8th Annual Meeting of the European Spine Society, September 13-15, 1997, in Kos, Greece.

http://www.chaseergo.com/research_08.html

“Evaluation of EMG signals from rehabilitated patients with low back pain using Wavelets”. Nick D. Panagiotacopulos, Jae S. Lee, Malcolm H. Pope, Ken Friesen

Journal of Electromyography and KinesiologySpecial Issue: Vol. 8, Issue 4,

August 1998, pages 269-278.

http://www.sciencedirect.com/science/article/pii/S1050641198000133

“Entropy based fatigue identification in spinal surface Electromyo-graphy signals using Wavelets”. N. D. Panagiotacopulos, J. C. Lee, K. Friesen, L. Wan

Advances in Intelligent Systems: Concepts, Tools and Applications,Chapter 43,

pages 487-498, 1999. Kluwer Academic Publishers.

http://link.springer.com/chapter/10.1007/978-94-011-4840-5_43

“A new method for the analysis of EMG signals from rehabilitated patients with low back pain using Wavelets”.

Nick D. Panagiotacopulos, J. S. Lee, Ken Friesen, M. H. Pope

Proceedings of the Japanese Spine Society and North American Spine Society.

Kamuela, Big Island, Hawaii, pp.147-148, July 2000.

https://www.spine.org/Documents/EducationEvents/SAS2000Proceedings.pdf

“Wavelets, Nuclear Magnetic Resonance Spectroscopy, and Head Traumas”.

Shic Frederick, Lin Alexander, Ross Brian D, Shelden CH, Panagiotacopulos Nick D., Lertsuntivit Sukit, Sanidge Lee Ann

Advances in Physics, Electronics, and Signal Processing Applications (a series of reference books and textbooks in Mathematics,Computer Science, and Engineering), World Scientific Press, pp.297-302, July 2000. .

http://www.wseas.us/e-library/conferences/athens2000/Papers2000/403.pdf

“Wavelets, Nuclear Magnetic Resonance Spectroscopy, and the chemical composition of tumors-some interesting results”.

Panagiotacopulos Nick D., Lertsuntivit Sukit, Sanidge Lee Ann, Shic Frederick, Lin Alexander, Ross Brian D, Shelden CH

Advances in Physics, Electronics, and Signal Processing Applications (a series of reference books and textbooks in Mathematics, Computer Science, and Engineering).World Scientific Press, pp.290-296, July 2000.

http://www.wseas.us/e-library/conferences/athens2000/Papers2000/402.pdf

“Evaluation of low back muscle surface EMG signals using Wavelets”.

M. H. Pope, A. Aleksiev, N. D. Panagiotacopulos, J. C. Lee, D. G. Wilder,

K. Friesen, W. Stielau, V. K. Goel

Clinical Biomechanics, October 2000, Volume 15, Issue 8, pp.567-573.

http://www.clinbiomech.com/article/S0268-0033(00)00024-3/abstract

“Definition of Neurochemical Patterns of Human Head Injury in Human MRS Using Wavelet Analysis”.

Frederick Shic, Alexander Lin, C H Shelden, Nick Panagiotacopulos, Brian Ross

Proc. Intl. Soc. Mag. Resonance. Med 9, July 2001 Glasgow, Scotland

http://www.researchgate.net/profile/Frederick_Shic/publication/266167892_Definition_of_the_Neurochemical_Patterns_of_Human_Head_Injury_in_1_H_MRS_Using_Wavelet_Analysis/links/54b678530cf24eb34f6d213b.pdf

“A Continuous Wavelet Transform treatment of Surface Electromyographic Signals obtained from Patients with Low Back Pain before and after rehabilitation”. N. D. Panagiotacopulos, M. L. Amos, D. G. Panayotakopoulos

IMAGE PROCESSING AND COMMUNICATIONS, INTELLIGENT SENSING, IMAGE PROCESSING AND APPLICATIONS, pp.113-120, Vol.8,No.2, 2002.

https://www.infona.pl/resource/bwmeta1.element.baztech-article-BAT2-0001-0283

“Wavelet Analysis of Low Back Surface EMG Signals Subject to Unexpected Load”.

M. H. Pope, N. D. Panagiotacopulos,w. Stielau, K. Friesen

JOURNAL OF MECHANICS AND BIOLOGY, WORLD SCIENTIFIC,

Vol. 4, No. 3, pp. 389-400, 2004.

http://www.researchgate.net/publication/263805765_WAVELET_ANALYSIS_OF_LOW_BACK_SURFACE_EMG_SIGNALS_SUBJECT_TO_UNEXPECTED_LOAD

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